Documentation

nuc44

Return NUC44 scoring matrix for nucleotide sequences

Syntax

ScoringMatrix = nuc44
[ScoringMatrix, MatrixInfo] = nuc44

Description

ScoringMatrix = nuc44 returns the scoring matrix. The nuc44 scoring matrix uses ambiguous nucleotide codes and probabilities rounded to the nearest integer.

Scale = 0.277316

Expected score = -1.7495024, Entropy = 0.5164710 bits

Lowest score = -4, Highest score = 5

Order: A C G T R Y K M S W B D H V N

[ScoringMatrix, MatrixInfo] = nuc44 returns a structure with information about the matrix with fields Name and Order.

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