Chromatography Toolbox
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- 20 downloads
Chromatography Toolbox takes an object-oriented approach to chromatography data processing using the MATLAB programming environment. Current features include:
1) File Conversion
2) Baseline Correction
3) Peak Detection
4) Peak Integration
5) Visualization
Supported file extensions include:
* Agilent (.D)
* Agilent (.MS)
* netCDF (.CDF)
Visit https://github.com/chemplexity/chromatography for more information about getting started.
Cite As
James Dillon (2020). Chromatography Toolbox (https://www.github.com/chemplexity/chromatography), GitHub. Retrieved .
Comments and Ratings (8)
Updates
| 1.4.0.0 | Fixed MATLAB File Exchange description. |
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@Chromatography
Development/File Conversion
Development/Parallel Computing
Examples
Methods/Export
Methods/Import
Methods/Integration
Methods/Other
Methods/Preprocessing
Methods/Visualization
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Zhi Fang (view profile)
Robert Stanley (view profile)
Looks interesting but did not import the 3D .uv data from agilent .D folder.
Clay Swackhamer (view profile)
I am trying to open a .RAW file using this toolbox. My .RAW file was created by the program "Total Chrome Navigator" running a Perkin-Elmer Clarus 500 gas chromatograph with a flame ionization detector. I installed the toolbox and declared the chromatography object but then get an error when trying to import the .RAW file. When the "import file" line runs a UI opens and I select the raw file, but then I get the following error:
Input data of type 'V.876176950' is currently unsupported.
[1/1] Error loading 'C:\Users\restofmypath\sample1.raw'
Unable to import selection
The full code is:
obj = Chromatography
data = obj.import('.RAW', 'progress', 'off');
Chris Arcadia (view profile)
This failed to load recently acquired Agilent ".D" chromatography files.
Omer Markovitch (view profile)
I suggest an edit in ExponentialGaussian.m, line 106 (after calculating the RMSDs):
rmsd(isnan(rmsd))=Inf
OR
rmsd(~isfinite(rmsd))=Inf
--Omer Markovitch--
Michael Wagner (view profile)
When trying to import .RAW files, I get the following message:
>> data=obj.import('.RAW')
[IMPORT]
Importing 1 files...
Format : .RAW
Input data of type 'V.66' is currently unsupported.
[1/1] Error loading '/Users/michaelwagner/Desktop/raw files/Len.raw'
Unable to import selection
data =
1x0 struct array with fields:
id
name
file
sample
method
time
tic
xic
mz
backup
status
Is there anyway I can make these RAW files in V.66 type to a type that can be read by the toolbox?
I run experiments on a Thermo Q Exactive spectrometer. Not sure if this makes a difference. Thanks for any help!
Ricardo Borges (view profile)
Dear James Dillon, does your ImportMZXML function reads mzXML 3.1 format? If so, can I get the average of the whole chromatogram into a vector, and further into a matrix (from a batch of different analysis)?
Thanks
SINA (view profile)