Answered
why nucleotides is more than 4?
Ambiguous nucleotide symbols are used to characterize sequences that can have variations. It was introduced in the 80's and they...
why nucleotides is more than 4?
Ambiguous nucleotide symbols are used to characterize sequences that can have variations. It was introduced in the 80's and they...
más de 10 años ago | 1
Answered
Sort items to existing cluster groups
Use the function |cluster| to give a cluster idx to each sample in X: C = cluster(Z,'MaxClust',number_of_groups); Then f...
Sort items to existing cluster groups
Use the function |cluster| to give a cluster idx to each sample in X: C = cluster(Z,'MaxClust',number_of_groups); Then f...
más de 10 años ago | 0
| accepted
Answered
Dot plot screen resolution
You could visualize the dot plot by regions: seqdotplot(AHSINS5H5N1(1:500),AHSINS5H5N1(1:500),11,7) seqdotplot(AHSINS5H5N1...
Dot plot screen resolution
You could visualize the dot plot by regions: seqdotplot(AHSINS5H5N1(1:500),AHSINS5H5N1(1:500),11,7) seqdotplot(AHSINS5H5N1...
más de 10 años ago | 0
Answered
tie-breaking in nwalign
Under ties, the simplegap algorithm favors first diagonal (matches/missmatches) then gap instertions in the first sequence and...
tie-breaking in nwalign
Under ties, the simplegap algorithm favors first diagonal (matches/missmatches) then gap instertions in the first sequence and...
más de 10 años ago | 0
| accepted
Answered
Difference between heatmap and clustermap
clustergram automatically standarizes the data in order to maximize the usage of the colormap. You may also alter the dynamic ra...
Difference between heatmap and clustermap
clustergram automatically standarizes the data in order to maximize the usage of the colormap. You may also alter the dynamic ra...
más de 10 años ago | 0
Answered
Load files to ngsbrowser from command line
This is undocummented, unfortunately it is only possible for short read data: bm1 = BioMap('mysamfile.sam') bm2 = BioMap...
Load files to ngsbrowser from command line
This is undocummented, unfortunately it is only possible for short read data: bm1 = BioMap('mysamfile.sam') bm2 = BioMap...
más de 10 años ago | 1
Answered
Sequence Distance
When you are comparing sequences it is common to first align them using a dynamic programing algorithm. SEQPDIST uses NWALIGN to...
Sequence Distance
When you are comparing sequences it is common to first align them using a dynamic programing algorithm. SEQPDIST uses NWALIGN to...
casi 11 años ago | 0
Answered
Bioinformatics
The first input of multialign is a collection of sequences to be aligned, this can be: 1) an array of structures with the "Seq...
Bioinformatics
The first input of multialign is a collection of sequences to be aligned, this can be: 1) an array of structures with the "Seq...
casi 11 años ago | 2
| accepted
Answered
Colorbar displays in new figure
Adding to what Patrick said, please not that you can pass a PVP to the constructor HeatMap object with the colormap: HeatMap(...
Colorbar displays in new figure
Adding to what Patrick said, please not that you can pass a PVP to the constructor HeatMap object with the colormap: HeatMap(...
casi 11 años ago | 0
Answered
Error message when use geosoftread() function
In 2008a GEOSOFTREAD was only able to read data sets GDS and sample GSM files. Is your file a GSE file? You should use instead G...
Error message when use geosoftread() function
In 2008a GEOSOFTREAD was only able to read data sets GDS and sample GSM files. Is your file a GSE file? You should use instead G...
casi 11 años ago | 0
Answered
How to understand "predecessor node" of the winning paths?
The PRED in your example 'encodes' all shortest paths from S to all other nodes, for example the shortest path between 1 and 6 i...
How to understand "predecessor node" of the winning paths?
The PRED in your example 'encodes' all shortest paths from S to all other nodes, for example the shortest path between 1 and 6 i...
alrededor de 11 años ago | 1
| accepted
Answered
Problem with biograph layout
The layout engine will readjust the size of the page according with the positions of the nodes, so, if you are going to set the ...
Problem with biograph layout
The layout engine will readjust the size of the page according with the positions of the nodes, so, if you are going to set the ...
más de 11 años ago | 2
Submitted
Mandelbrot set vectorized
Produces the Mandelbrot set using vectorized code.
casi 18 años ago | 3 downloads |
Submitted
Wild WHICH
Same as 'which' but with the option of use wild cards. Faster than 'lookfor'
más de 20 años ago | 1 download |