Same script different drawing result in matlab app deisgner.

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I am making a gears drawing and calculation app in matlab app designer in wich the user enters some variables and its values, and when the user clicks the button, the app runs a script which realizes a bunch of calculations and it shows the results and the gears drawed.
The point is that, if I run the script with the values, the script draws the gears perfectly as you can see in the first image below. But when I run de app (which contains, as long as I know, the exactly same script) it draws the gears quite deformed as you can see in the second image below
First image: when running on command window the script alone
Second image: when running the full app (with the script inside)
I have tried delimiting the X and Y axis values. Of course I have used grid, axis equal and hold on within the code, but anything of this seems to work. Also, it is not a zoom issue, I have zoomed the second image as far as I could and it remains the same deformed drawing.
How is that possible? What am I doing wrong? How can I fix this? Thanks a lot
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