Diffusion gradient vector field in 3D

Generate in 3D the diffusion gradient vector field as in Xu and Prince 1998

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Generate the diffusion gradient vector field as in Xu and Prince 1998
dgvf_calc is the three dimensional extension of the 2D version described in Equation 12
Xu and Prince 1998,"Snakes, Shapes, and Gradient Vector Flow", IEEE Transactions on Image Processing Vol.7(3)

Input:
I: three dimensional image (matrix) (assumed normalized as in I = (I-min(I(:)))/(max(I(:))-min(I(:))));
miu: the smoothing parameter (more smoothing -- higher miu-- for noisy images)
niter: number of iterations
dt: time step
dx, dy,dz: pixel spacing, set all to one for isotropic images

Output:
un, vn, wn: the gradient vector field

Example usage:
[un vn wn] = dgvf_calc(I,sqrt(numel(I)), 0.5, 1, 1, 1, 1)

Note: The code was developed with 3d flourescence microscopy images in mind (bright objects against dark background). Enforcement of boundary conditions has been omitted for better performance in this case.

% Author: Dr.Khaled Khairy, Janelia Farm Research Campus, Howard Hughes Medical Institute.June 2011.
Please send corrections or comments to khairyk@janelia.hhmi.org

Citar como

Khaled Khairy (2026). Diffusion gradient vector field in 3D (https://es.mathworks.com/matlabcentral/fileexchange/31994-diffusion-gradient-vector-field-in-3d), MATLAB Central File Exchange. Recuperado .

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Información general

Compatibilidad con la versión de MATLAB

  • Compatible con cualquier versión

Compatibilidad con las plataformas

  • Windows
  • macOS
  • Linux
Versión Publicado Notas de la versión Action
1.2.0.0

added note to clarify the scope of application.

1.1.0.0

minor correction to the comments and synchronized variable names with original publication.

1.0.0.0