Sequence Assembly App

Versión 1.4.0.0 (32,8 KB) por Turner Conrad
Assemble overlapping sequences according to reference
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Actualizado 22 jul 2014

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Assembling overlapping sequences, especially with batches of samples, is a difficult task. This app is designed to assist the user in importing sets of sequences by sample into MATLAB, clip them to a common reference sequence (via Smith-Waterman local alignment), determine their overlap (also Smith-Waterman), and assemble them into a single full sequence construct. Sequences can be imported using a pre-formatted FASTA or via sequential copying to the clipboard. After processing, constructs with acceptable length and reference local alignment score can be selected for export. Export options include feeding clipped sequences, nucleotide assemblies, and/or protein translations to FASTA, the Sequence Viewer App, and/or the Sequence Alignment App after multiple global alignment.
Please provide feedback if you find this app useful or if you would like to see any changes/additions.

Citar como

Turner Conrad (2026). Sequence Assembly App (https://es.mathworks.com/matlabcentral/fileexchange/46071-sequence-assembly-app), MATLAB Central File Exchange. Recuperado .

Compatibilidad con la versión de MATLAB
Se creó con R2014a
Compatible con cualquier versión
Compatibilidad con las plataformas
Windows macOS Linux
Categorías
Más información sobre Genomics and Next Generation Sequencing en Help Center y MATLAB Answers.
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Versión Publicado Notas de la versión
1.4.0.0

Edited description
1.3.0.0

Capabilities greatly improved to allow any number of sequences per sample, automatic strand/reference position detection, and more fluid import/export. Name changed to Sequence Assembly App. See CHANGELOG section in code for details.
1.2.0.0

Implemented as app
1.1.0.0

Name changed from forRevAlign to strandAlign; see CHANGELOG section in code for detailed changes.
1.0.0.0