A simple BLAST algorithm
The function implements a BLAST (Basic Local Alignment Search Tool) algorithm using a simple dynamic programming strategy. A self-defined vTree class is also included, on which the "Reconstruct" process is based. The data of the tree is stored in a vector. The idea is inspired by the union-find algorithm.
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Ligong Han (2024). A simple BLAST algorithm (https://www.mathworks.com/matlabcentral/fileexchange/49003-a-simple-blast-algorithm), MATLAB Central File Exchange. Recuperado .
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myblast/
myblast/@vTree/
Versión | Publicado | Notas de la versión | |
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1.3 | - vTree class updated: fixed an error of the 'delChild' method |
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1.2.0.0 | - Updated vTree |
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1.1.0.0 | - a missing file added
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1.0.0.0 |