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This repository contains a Japanese version of a published repository "Electrophysiology tutorial for neuroscience" by Shubo Chakrabarti htt

Electrophysiology-Tutorial-for-Neuroscience_jpThis repository contains a Japanese version of a published repository "Electrophysiology tutorial for neuroscience" by Shubo Chakrabarti

This is a tutorial for key data analysis steps used by neuroscientists - filtering, spike extraction, PCA, clustering, and spectral analysis

Electrophysiology data analysis

Clarinet is a MATLAB® app designed to analyze electrophysiology experiments.Developed for neuroscience research, Clarinet allows you to analyze neuronal signals acquired with a variety of

Symphony

Versión 2.2.3.0

por Mark Cafaro

Data Acquisition System

WinWCP MATLAB Importer

Versión 1.2.0.0

por David

Import and Plot WinWCP Patch Clamp Electrophysiology Files into MATLAB

App developed for cardiac electrophysiology research

Application developed for cardiac electrophysiology research. By David de Diego Maffrand, at ITACA institute, UPV.

electroCUDA

Versión 0.0.200

por Kevin Tan

Robust pelectrophysiology tools with GPU acceleration

for electrophysiology. Core features include noise-resistant signal processing, robust statistics & extensive hardware acceleration.ElectroCUDA is intended for any multichannel field potential

sg-s/kontroller

Versión 1.1.0.0

por srinivas.gs

Wrapper for MATLAB DAQ. Easy recording, instrument control for experiments. e.g. electrophysiology.

bombcell

Versión 1.4.0.0

por Julie Fabre

Automated manual curation and cell classification of spike-sorted electrophysiology data in MATLAB. Fine-tuned for kilosorted Neuropixels da

💣 Bombcell: find bombshell cells! 💣 Manual curation of electrophysiology spike sorted units is slow, laborious, and hard to standardize and reproduce. Bombcell is a powerful toolbox that addresses

A toolbox for biological signal modeling and processing, written mainly in Matlab

Kilosort

Versión 1.0.0.0

por Marius Pachitariu

Fast and accurate spike sorting toolbox

Brainstorm

Versión 3.4.0.0

por Martin Cousineau

Brainstorm: Open source application for MEG/EEG data analysis

Brainstorm is a collaborative, open-source application dedicated to the analysis of brain recordings: MEG, EEG, fNIRS, ECoG, depth electrodes and animal electrophysiology. Our objective is to share a

Data Browser

Versión 1.0.0.0

por Phil Larimer

A utility to browse data files that involve one or more channels of data over time.

Plotting and Analysis of Neuroscience Database-Oriented Research Applications

PANDORA is a Matlab Toolbox for analyzing neuronal electrophysiology data and constructing databases. PANDORA: Makes database management accessible from your electrophysiology project; Works

fcollman/abfload

Versión 1.13.0.0

por Forrest Collman

a version of abfload which is capable of reading abf 2.0 files

Single electrode extracellular recording simulator

Psth

Versión 1.0.0.0

por Rajiv Narayan

Computes the peri-stimulus time histogram for neural spike times

openep-core

Versión 1.0.03

por Steven

Core OpenEP code - Matlab implementation

OpenEP is a free and feature-full implementation of data parsing and analysis tools for cardiac electrophysiology research. OpenEP Data Parsing Modules allow proprietary data formats from major

MEAnalyzer

Versión 2023.01.16

por Raha Dastgheyb

Anakyze spike trains exported from multi-electrode arrays

doseResponse

Versión 1.2.0.0

por Ritchie Smith

Plots dose/response curve and calculates EC50 and Hill Coefficient.

Required analysis codes for the joint analysis which we have introduced in Kapucu et al. (2015).

Rasterplot

Versión 1.0.0.0

por Rajiv Narayan

Plotting Routine to display neural spike trains

A class wrapper for the MODTRAN 5 atmospheric radiative transfer code.

Set of functions for the basic analysis of spike data from neurophysiological experiments

Detection of location of spike times

Implements an improved regularity analysis for spike trains obtained from auditory neurons.

SynapticConductance

Versión 1.4.0.0

por Rune W Berg

Estimating inhibition, excitation and total synaptic conductance from intracellular recordings.

A behavioural model for Analogue Front End for developing neural spike sorting systems

Real time channel streaming with the CED's Power1401 device.

Plots spike rasters from spike times or binary trains. Faster than most implementations.

An interactive GUI for an endothelial cell model.

membrane electrophysiology and calcium dynamics to investigate EC responses to various stimuli. It also expands on previous formulations by including more detailed transmembrane current descriptions.To

abfload

Versión 1.4.0.0

por Harald Hentschke

abfload imports data in the Axon abf format (three different recording modes).

Simulink implementation of a sophisticated ventricular action potential

myocyte electrophysiology: a theoretical investigation.Biophys J. 2007 92:1522-1543.The action potential is elicited by the block named Stimulus : 1 Hz is the initial condition.Initial conditions of the

spike_remove

Versión 1.0.0.0

por Rune W Berg

This function identifies and removes spikes fra a trace of and membrane potential recording.

Toolbox for the analysis of spontaneous and evoked synaptic currents or potentials.

An automated system to obtain patch clamp recordings from neurons in awake behaving mice.

A MATLAB implementation of the DeepInterpolation principle.

of the example inference workflows. You can individually view (👀) or run (▶️) these examples on MATLAB Online:NicknameTrained ModelSample dataViewRun"Ephys" (electrophysiology

Demo simulator of a firing biological neuron.

mPhys

Versión 1.2.0.0

por Phil Larimer

Software for acquisition and manipulation of electrophysiological data from neurons.

Algorithm from Fraser and Schwartz, "Recording from the same neurons chronically in motor cortex"

Kernel density estimation with bandwidths locally adapted to data.

A MATLAB toolbox for interacting with the Allen Brain Observatory

2Large-scale neural probe recordings"ephys" (electrophysiology)detailsVisual Coding 2P 3Two-photon calcium imaging"ophys" (optical physiology)detailsThe Visual Coding datasets are both collected from the living

Read files generated by the Intan Technologies GUI for recording multichannel data.

Matlab class to import HEKA Patchmaster files

Instructions and m-files for setting up a remote-controlled multielectrode dish perfusion system.

BioSig supports about 50 different data formats, and provides numourous tools for the analysis of electrophysilological data.

), electrooculogram (EOG), electromyogram (EMG), respiration, patch-clamp electrophysiology. Major application areas are: Neuroinformatics, brain-computer interfaces, neurophysiology, psychology, cardiovascular systems

Function to identify the axon initial segment from dendrites using electrophysiological recording

Identifies groups of linearly independent columns in a cell array A

Detect postsynaptic currents or potentials

This code can be used to spectrally analyze a an ABR ASCII waveform by windowing and zero padding.

Sodium Imaging

Versión 1.0.1

por luizafil

These files are used to obtain and analyze Sodium fluorescent recordings

-The tsm2mat is used to convert .tsm files into .mat-The Analog_IV file is used to record electrophysiology data during the fluorescent imaging.-The ImageAligne file is used to align images to

Utilities for managing Neuropixel SpikeGLX datasets, Kilosort2 sorting, waveform extraction and other tools

SqueakySpk v0.1

Versión 1.0.0.0

por Jon Newman

SQUEAKYSPK: Matlab class for making extracellular, microelectrode array data squeaky clean.

Extract Hodgkin-Huxley type ion channel parameters from a Neurofit report file.

Detailed simulation of neural activity in three-dimensional patches of brain tissue

readPLXFileC

Versión 1.0.0.0

por Benjamin Kraus

A MEX function to read a PLX data file (Plexon, Inc.).

Sinc Resample

Versión 1.0.0.0

por Malcolm Lidierth

SincResample resamples signals to arbitrary lengths/frequencies and/or timeshifts them

Obtains the current source density from local field potential data recorded from a linear electrode array

Spike Detection

MClust

Versión 4.5

por A David Redish

MClust is a Matlab-based spike sorting toolbox for the separation of putative cells from multi-site neurophysiological recordings. It is pa

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