margin

Find classification margins for support vector machine (SVM) classifier

Syntax

m = margin(SVMModel,TBL,ResponseVarName)

m = margin(SVMModel,TBL,Y)

m = margin(SVMModel,X,Y)

Description

m = margin(SVMModel,TBL,ResponseVarName) returns the classification margins (m) for the trained support vector machine (SVM) classifier SVMModel using the sample data in table TBL and the class labels in TBL.ResponseVarName.

m is returned as a numeric vector with the same length as Y. The software estimates each entry of m using the trained SVM classifier SVMModel, the corresponding row of X, and the true class label Y.

m = margin(SVMModel,TBL,Y) returns the classification margins (m) for the trained SVM classifier SVMModel using the sample data in table TBL and the class labels in Y.

m = margin(SVMModel,X,Y) returns the classification margins for SVMModel using the predictor data in matrix X and the class labels in Y.

Examples

Estimate Test Sample Classification Margins of SVM Classifiers

Load the ionosphere data set.

load ionosphere
rng(1); % For reproducibility

Train an SVM classifier. Specify a 15% holdout sample for testing, standardize the data, and specify that 'g' is the positive class.

CVSVMModel = fitcsvm(X,Y,'Holdout',0.15,'ClassNames',{'b','g'},...
    'Standardize',true);
CompactSVMModel = CVSVMModel.Trained{1}; ...
    % Extract the trained, compact classifier
testInds = test(CVSVMModel.Partition);   % Extract the test indices
XTest = X(testInds,:);
YTest = Y(testInds,:);

CVSVMModel is a ClassificationPartitionedModel classifier. It contains the property Trained, which is a 1-by-1 cell array holding a CompactClassificationSVM classifier that the software trained using the training set.

Estimate the test sample classification margins.

m = margin(CompactSVMModel,XTest,YTest);
m(10:20)

ans = 11×1

    3.5461
    5.5941
    4.9944
    4.5609
   -4.7963
    5.5125
   -2.8772
    1.8669
    9.4997
    9.5030
      ⋮

An observation margin is the observed true class score minus the maximum false class score among all scores in the respective class. Classifiers that yield relatively large margins are preferred.

Select SVM Classifier Features by Examining Test Sample Margins

Perform feature selection by comparing test sample margins from multiple models. Based solely on this comparison, the model with the highest margins is the best model.

Load the ionosphere data set.

load ionosphere
rng(1); % For reproducibility

Partition the data set into training and test sets. Specify a 15% holdout sample for testing.

Partition = cvpartition(Y,'Holdout',0.15);
testInds = test(Partition); % Indices for the test set
XTest = X(testInds,:);
YTest = Y(testInds,:);

Partition defines the data set partition.

Define these two data sets:

• fullX contains all predictors (except the removed column of 0s).

• partX contains the last 20 predictors.

fullX = X;
partX = X(:,end-20:end);

Train SVM classifiers for each predictor set. Specify the partition definition.

FullCVSVMModel = fitcsvm(fullX,Y,'CVPartition',Partition);
PartCVSVMModel = fitcsvm(partX,Y,'CVPartition',Partition);
FCSVMModel = FullCVSVMModel.Trained{1};
PCSVMModel = PartCVSVMModel.Trained{1};

FullCVSVMModel and PartCVSVMModel are ClassificationPartitionedModel classifiers. They contain the property Trained, which is a 1-by-1 cell array holding a CompactClassificationSVM classifier that the software trained using the training set.

Estimate the test sample margins for each classifier.

fullM = margin(FCSVMModel,XTest,YTest);
partM = margin(PCSVMModel,XTest(:,end-20:end),YTest);
n = size(XTest,1);
p = sum(fullM < partM)/n

p = 0.2500

Approximately 25% of the margins from the full model are less than those from the model with fewer predictors. This result suggests that the model trained with all the predictors is better.

Input Arguments

SVMModel — SVM classification model

ClassificationSVM model object | CompactClassificationSVM model object

SVM classification model, specified as a ClassificationSVM model object or CompactClassificationSVM model object returned by fitcsvm or compact, respectively.

TBL — Sample data

table

Sample data, specified as a table. Each row of TBL corresponds to one observation, and each column corresponds to one predictor variable. Optionally, TBL can contain additional columns for the response variable and observation weights. TBL must contain all of the predictors used to train SVMModel. Multicolumn variables and cell arrays other than cell arrays of character vectors are not allowed.

If TBL contains the response variable used to train SVMModel, then you do not need to specify ResponseVarName or Y.

If you trained SVMModel using sample data contained in a table, then the input data for margin must also be in a table.

If you set 'Standardize',true in fitcsvm when training SVMModel, then the software standardizes the columns of the predictor data using the corresponding means in SVMModel.Mu and the standard deviations in SVMModel.Sigma.

Data Types: table

X — Predictor data

numeric matrix

Predictor data, specified as a numeric matrix.

Each row of X corresponds to one observation (also known as an instance or example), and each column corresponds to one variable (also known as a feature). The variables in the columns of X must be the same as the variables that trained the SVMModel classifier.

The length of Y and the number of rows in X must be equal.

If you set 'Standardize',true in fitcsvm to train SVMModel, then the software standardizes the columns of X using the corresponding means in SVMModel.Mu and the standard deviations in SVMModel.Sigma.

Data Types: double | single

ResponseVarName — Response variable name

name of variable in TBL

Response variable name, specified as the name of a variable in TBL. If TBL contains the response variable used to train SVMModel, then you do not need to specify ResponseVarName.

If you specify ResponseVarName, then you must do so as a character vector or string scalar. For example, if the response variable is stored as TBL.Response, then specify ResponseVarName as 'Response'. Otherwise, the software treats all columns of TBL, including TBL.Response, as predictors.

The response variable must be a categorical, character, or string array, logical or numeric vector, or cell array of character vectors. If the response variable is a character array, then each element must correspond to one row of the array.

Data Types: char | string

Y — Class labels

categorical array | character array | string array | logical vector | numeric vector | cell array of character vectors

Class labels, specified as a categorical, character, or string array, logical or numeric vector, or cell array of character vectors. Y must be the same as the data type of SVMModel.ClassNames. (The software treats string arrays as cell arrays of character vectors.)

The length of Y must equal the number of rows in TBL or the number of rows in X.

More About

Classification Edge

The edge is the weighted mean of the classification margins.

The weights are the prior class probabilities. If you supply weights, then the software normalizes them to sum to the prior probabilities in the respective classes. The software uses the renormalized weights to compute the weighted mean.

One way to choose among multiple classifiers, for example, to perform feature selection, is to choose the classifier that yields the highest edge.

Classification Margin

The classification margin for binary classification is, for each observation, the difference between the classification score for the true class and the classification score for the false class.

The software defines the classification margin for binary classification as

$$m=2yf\left(x\right).$$

x is an observation. If the true label of x is the positive class, then y is 1, and –1 otherwise. f(x) is the positive-class classification score for the observation x. The classification margin is commonly defined as m = yf(x).

If the margins are on the same scale, then they serve as a classification confidence measure. Among multiple classifiers, those that yield greater margins are better.

Classification Score

The SVM classification score for classifying observation x is the signed distance from x to the decision boundary ranging from -∞ to +∞. A positive score for a class indicates that x is predicted to be in that class. A negative score indicates otherwise.

The positive class classification score $$f(x)$$ is the trained SVM classification function. $$f(x)$$ is also the numerical predicted response for x, or the score for predicting x into the positive class.

$$f(x)={\displaystyle \sum _{j=1}^n{\alpha }_j}{y}_{j}G(x_j,x)+b,$$

where $$({\alpha }_1,\mathrm{...},{\alpha }_n,b)$$ are the estimated SVM parameters, $$G(x_j,x)$$ is the dot product in the predictor space between x and the support vectors, and the sum includes the training set observations. The negative class classification score for x, or the score for predicting x into the negative class, is –f(x).

If G(x_j,x) = x_j′x (the linear kernel), then the score function reduces to

$$f\left(x\right)=\left(x/s\right)\prime \beta +b.$$

s is the kernel scale and β is the vector of fitted linear coefficients.

For more details, see Understanding Support Vector Machines.

Algorithms

For binary classification, the software defines the margin for observation j, m_j, as

$$m_j=2y_{j}f(x_j),$$

where y_j ∊ {-1,1}, and f(x_j) is the predicted score of observation j for the positive class. However, m_j = y_jf(x_j) is commonly used to define the margin.

References

[1] Christianini, N., and J. C. Shawe-Taylor. An Introduction to Support Vector Machines and Other Kernel-Based Learning Methods. Cambridge, UK: Cambridge University Press, 2000.

Extended Capabilities

Tall Arrays

Calculate with arrays that have more rows than fit in memory.

This function fully supports tall arrays. For more information, see Tall Arrays.

GPU Arrays

Accelerate code by running on a graphics processing unit (GPU) using Parallel Computing Toolbox™.

This function fully supports GPU arrays. For more information, see Run MATLAB Functions on a GPU (Parallel Computing Toolbox).