How do you convert a tsv or txt file to a GFF file on matlab, with data you've downloading from NCBI or Ensembl ?

15 views (last 30 days)
Benjamin Joseph
Benjamin Joseph on 9 May 2014
Answered: Lucio Cetto on 3 Jun 2014
I have a gene data downloaded from NCBI and ensembl, and its a tsv and txt file. Now i need a matlab code to help me convert those files in GFF. Now what steps do i go by in order for this to happen? Thanks and hope someone could help me asap

Answers (1)

Lucio Cetto
Lucio Cetto on 3 Jun 2014
There is a demo function ( ensemblmart2gff ) in the toolbox/bioinfo/biodemos directory that may help you to get you started.
Lucio

Community Treasure Hunt

Find the treasures in MATLAB Central and discover how the community can help you!

Start Hunting!

Translated by