Load files to ngsbrowser from command line

3 visualizaciones (últimos 30 días)
Micah
Micah el 9 de Sept. de 2011
I am looking for a way to load files (both reference fasta and sam) into the ngsbrowser from the command line - ie without clicking file load or file add data. Does anyone know of a solution? Or does anyone know how to code mouse clicks/keystrokes so that a script (I am writing a GUI using GUIDE) could 'do' the clicking for the user?
Thank!

Iniciar sesión para responder a esta pregunta.

Respuestas (1)

Lucio Cetto
Lucio Cetto el 18 de Oct. de 2011
This is undocummented, unfortunately it is only possible for short read data:
bm1 = BioMap('mysamfile.sam')
bm2 = BioMap('mybamfile.bam')
ngsbrowser
ngsbrowser(bm1)
ngsbrowser(bm2)
  1 comentario
Micah
Micah el 18 de Oct. de 2011
Thanks so much. Luckily I only have short read data.

Iniciar sesión para comentar.

Categorías

Más información sobre Migrate GUIDE Apps en Help Center y File Exchange.

Etiquetas

Productos

Community Treasure Hunt

Find the treasures in MATLAB Central and discover how the community can help you!

Start Hunting!

Translated by