Getgenpept and getgenbank with https change in ncbi site

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R C
R C el 23 de Sept. de 2016
Editada: Paola Favaretto el 23 de Dic. de 2016
Yesterday (22nd Sept) the getgenpept function in the bioinformatics toolbox stopped working for a few hours whilst the NCBI were testing their new protocol requiring https instead of http. There are a couple more test slots scheduled ( NCBI https tests ) and it will switch over completely from Tuesday (27th Sept).
I'm currently teaching a course which relies on this function for getting the data for much of the coursework. I will obviously download the key data for future assignments before Tuesday and make it available to the students, but I was wondering if anyone could come up with a Matlab based work-around, for my students as I would prefer for them to not be limited to the data I provide.

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Respuestas (2)

Paola Favaretto
Paola Favaretto el 23 de Sept. de 2016
Please contact MathWorks Tech Support. They will be able to provide you with a patch or a suitable workaround.
Paola Favaretto
Paola Favaretto el 13 de Dic. de 2016
Editada: Paola Favaretto el 23 de Dic. de 2016
After the transition to https at NCBI (effective November 2016), GETGENBANK, GETGENPEPT and other functions accessing NCBI web servers fail.
You can download a patch for previous releases here .

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