You can try the tight_subplot add-on in MATLAB. You can adjust margins and gaps between the axes using this.
tight_subplot is one of the several submissions in MATLAB File Exchange on MATLAB Central which is a forum for our product users to interact, exchange information and knowledge, without MathWorks' involvement. Feel free to contact the author of this submission directly for specific questions about the implementation
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https://es.mathworks.com/matlabcentral/answers/642655-eliminate-extra-spaces-between-subplots-of-different-size#comment_1123030
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https://es.mathworks.com/matlabcentral/answers/642655-eliminate-extra-spaces-between-subplots-of-different-size#comment_1123030
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