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Machine learning methods to segment cells

12 visualizaciones (últimos 30 días)
AAS el 19 de Mzo. de 2021
Respondida: Ashish Uthama el 13 de Oct. de 2023
I am very new to ML methods. I want to use ML to segment within the pictures the cells and black blobs within them. The problem with simple thresholding is a lot of times the cell outlines where it is darker also gets counted as a black blob. So I was wondering if there is any machine learning algo that I can train to identify the cells and black blobs.
Any direction or guidance will be very much appreciated.

Respuesta aceptada

Shashank Gupta
Shashank Gupta el 22 de Mzo. de 2021
There are many good segmentation algorithm available which you can try. Its hard to point out one. Check out this file exchange link. It should work for your case, even if it doesn't It will give you a good headstart to explore more. You can try some basic image processing based segmentation and see if the results are apt for your work. Check out this link.
I hope this helps.

Más respuestas (1)

Ashish Uthama
Ashish Uthama el 13 de Oct. de 2023
In 23b, you could try using the Cellpose add-on:


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