scGEAToolbox (single-cell Gene Expression Analysis Toolbox)

Versión 24.3.7 (231 MB) por James Cai
Single-cell Gene Expression Analysis Toolbox
1K descargas
Actualizado 22 Mar 2024

scGEAToolbox - a Matlab toolbox for single-cell RNA-seq data analyses

View scGEAToolbox on File Exchange

Quick Installation

Run the following code in MATLAB:

unzip('https://github.com/jamesjcai/scGEAToolbox/archive/main.zip');
addpath('./scGEAToolbox-main');

Getting Started Quickly Using the SCGEATOOL App

Run the following code in MATLAB to start:

scgeatool

Open in MATLAB Online

Read Documentation

scGEAToolbox Documentation

SEE ALSO - Standalone Application SCGEATOOL :: Single-Cell Gene Expression Analysis Tool

SCGEATOOL is a standalone application running on Windows machines that do not have MATLAB installed. SCGEATOOL is a lightweight and blazing fast desktop application that provides interactive visualization functionality to analyze single-cell transcriptomic data. SCGEATOOL allows you to easily interrogate different views of your scRNA-seq data to quickly gain insights into the underlying biology. SCGEATOOL is a pre-compiled standalone application developed in MATLAB. Pre-compiled standalone releases are meant for those environments without access to MATLAB licenses. Standalone releases provide access to all of the functionality of the SCGEATOOL standard MATLAB release encapsulated in a single application. SCGEATOOL is open-sourced to allow you to experience the added flexibility and speed of the MATLAB environment when needed.

Help

If you have any questions or require assistance using scGEAToolbox, please contact me.

Citation

Cai JJ. scGEAToolbox: a Matlab toolbox for single-cell RNA sequencing data analysis. Bioinformatics. 2019;btz830. doi:10.1093/bioinformatics/btz830

Citar como

Cai JJ. scGEAToolbox: a Matlab toolbox for single-cell RNA sequencing data analysis. Bioinformatics. 2019 Nov 7:btz830. doi: 10.1093/bioinformatics/btz830. PMID: 31697351.

Compatibilidad con la versión de MATLAB
Se creó con R2023b
Compatible con cualquier versión
Compatibilidad con las plataformas
Windows macOS Linux
Categorías
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+run/external/mt_CCPE

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@SingleCellExperiment

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No se pueden descargar versiones que utilicen la rama predeterminada de GitHub

Versión Publicado Notas de la versión
24.3.7

See release notes for this release on GitHub: https://github.com/jamesjcai/scGEAToolbox/releases/tag/v24.3.7

24.3.6

See release notes for this release on GitHub: https://github.com/jamesjcai/scGEAToolbox/releases/tag/v24.3.6

24.3.5

See release notes for this release on GitHub: https://github.com/jamesjcai/scGEAToolbox/releases/tag/v24.3.5

24.3.4

See release notes for this release on GitHub: https://github.com/jamesjcai/scGEAToolbox/releases/tag/v24.3.4

24.3.3

See release notes for this release on GitHub: https://github.com/jamesjcai/scGEAToolbox/releases/tag/v24.3.3

24.3.2

See release notes for this release on GitHub: https://github.com/jamesjcai/scGEAToolbox/releases/tag/v24.3.2

24.3.1

See release notes for this release on GitHub: https://github.com/jamesjcai/scGEAToolbox/releases/tag/v24.3.1

24.3.0

See release notes for this release on GitHub: https://github.com/jamesjcai/scGEAToolbox/releases/tag/v24.3.0

24.2.0

See release notes for this release on GitHub: https://github.com/jamesjcai/scGEAToolbox/releases/tag/v24.2.0

24.1.3

See release notes for this release on GitHub: https://github.com/jamesjcai/scGEAToolbox/releases/tag/v24.1.3

24.1.1

See release notes for this release on GitHub: https://github.com/jamesjcai/scGEAToolbox/releases/tag/v24.1.1

24.1.0

See release notes for this release on GitHub: https://github.com/jamesjcai/scGEAToolbox/releases/tag/v24.1.0

23.9.0

See release notes for this release on GitHub: https://github.com/jamesjcai/scGEAToolbox/releases/tag/v23.9.0

23.8.0

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23.7.0

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23.6.5.0

See release notes for this release on GitHub: https://github.com/jamesjcai/scGEAToolbox/releases/tag/v23.6.5

23.6.0.0

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23.5.0.0

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23.4.7.0

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23.4.6

See release notes for this release on GitHub: https://github.com/jamesjcai/scGEAToolbox/releases/tag/v23.4.6

23.4.5.0

See release notes for this release on GitHub: https://github.com/jamesjcai/scGEAToolbox/releases/tag/v23.4.5
See release notes for this release on GitHub: https://github.com/jamesjcai/scGEAToolbox/releases/tag/v23.4.5

23.4.4.0

See release notes for this release on GitHub: https://github.com/jamesjcai/scGEAToolbox/releases/tag/v23.4.4

23.4.2.0

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23.4.1.0

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23.3.2.0

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23.3.1.0

See release notes for this release on GitHub: https://github.com/jamesjcai/scGEAToolbox/releases/tag/v23.3.1

23.3.0.0

See release notes for this release on GitHub: https://github.com/jamesjcai/scGEAToolbox/releases/tag/v23.3.0

23.2.6.0

See release notes for this release on GitHub: https://github.com/jamesjcai/scGEAToolbox/releases/tag/v23.2.6

23.2.4.0

See release notes for this release on GitHub: https://github.com/jamesjcai/scGEAToolbox/releases/tag/v23.2.4

23.2.3.0

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23.2.1.0

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23.1.4.0

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23.1.3.0

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23.1.2.0

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23.1.1.0

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22.9.1

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22.7.1

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22.6.1

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22.4.11

See release notes for this release on GitHub: https://github.com/jamesjcai/scGEAToolbox/releases/tag/v22.4.11

22.4.1

See release notes for this release on GitHub: https://github.com/jamesjcai/scGEAToolbox/releases/tag/v22.4.1

22.3.6

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22.3.1

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22.2.21

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22.2.9

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22.1.31

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22.1.30

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22.1.29

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22.1.23

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22.1.19

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22.1.13

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21.12.28

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21.12.13

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21.12.10

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21.12.8

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21.12.04

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21.11.19

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21.11.18

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21.11.13

See release notes for this release on GitHub: https://github.com/jamesjcai/scGEAToolbox/releases/tag/v21.11.13

21.11.6

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21.10.17

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21.9.30

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21.9.23

See release notes for this release on GitHub: https://github.com/jamesjcai/scGEAToolbox/releases/tag/v21.9.23

21.9.7

See release notes for this release on GitHub: https://github.com/jamesjcai/scGEAToolbox/releases/tag/v21.9.7

21.9.3

See release notes for this release on GitHub: https://github.com/jamesjcai/scGEAToolbox/releases/tag/v21.9.3

21.9.2

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21.8.29

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21.8.24

See release notes for this release on GitHub: https://github.com/jamesjcai/scGEAToolbox/releases/tag/v21.8.24

21.8.9

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21.8.4

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21.8.1

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21.7.29.0

See release notes for this release on GitHub: https://github.com/jamesjcai/scGEAToolbox/releases/tag/v21.7.29

21.7.26

new doc

21.7.14

new title

21.7.13

indicates the folder to be added when installing add-on

21.1.16

sc_scatter

21.1.15

SC_SCATTER(X, genelist)

21.1.14

Try new function: SC_SCATTER.m
Read documentation URL: https://scgeatoolbox.readthedocs.io/

20.8.2

add sc_celltypeexplorer_auto

20.7.5

cell marker gene identification function added.

1.0.0

Para consultar o notificar algún problema sobre este complemento de GitHub, visite el repositorio de GitHub.
Para consultar o notificar algún problema sobre este complemento de GitHub, visite el repositorio de GitHub.