Fulden Buyukozturk

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simBiology exported model simulation output not in the same order as `InitialValues`
Hello, exported_model.InitialValues lists all of exported_model's editable objects which is by default everything (compartment...

2 días hace | 1

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Space saving way to plot bar plot for sbiosobol results
Hi Jesse, You could modify properties of TiledChartLayout to save some space, such as TileSpacing. Below is an example. Oth...

11 días hace | 0

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Is it possible to display initial assignments and/or parameters in SimBiology diagram?
That's right, starting R2020b initial assignments are not displayed on the diagram and only parameters that are on the left hand...

alrededor de 2 meses hace | 0

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Question about available PK models for practicing purposes
Hi Christos, A couple of thoughts: SimBiolog has a PK library. You can pick a 1 or 2 comp model from there, populate the param...

3 meses hace | 0

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Visualize selected pathways in simbiology GUI
In R2022b (I understand from the release info that this is the version you're running), you can search both the Diagram and the ...

3 meses hace | 0

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My Matlab (version R2022b) does not include the SimBiology App by default in the App collection under the Computational Biology section
Hi, In MATLAB you can use Add-Ons Explorer to install SimBiology. Go to Home->Add-Ons->Get add-ons, seach for SimBiology and...

3 meses hace | 1

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How to build indirect response model?
Hi, If I understand your question correctly, your indirect response model is in derivative form as: dProtein/dt = kin - kout*(...

4 meses hace | 0

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How to plot individual concentration vs time plot by group?
If you have a column in your dataset with the dose info, you can use this column to slice the data using Visual Channels. Please...

4 meses hace | 0

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How to make simbiology plot concetratin?
SimBiology returns simulation results of quantities (for example, species) in the user specified units. So if a species is in un...

5 meses hace | 0

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How do I convert a BAM file to SAM and GFF file to GTF for use in featurecount?
The featurecount function now accepts BAM files. GFF is not supported by featurecount, but the cuffgffread function can convert ...

8 meses hace | 0

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Interested in changing line properties of sbioplot
Hello, These can be set using line object handles, for example: ax = sbioplot(sbiosimulate(m1,d)); h = findobj(ax, 'Type', '...

10 meses hace | 2

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simulations of 100 samples (1 time 100 sample size) varied by Height or Weight and export data to excel file using simbiology matlab version 2022a
Hello. You could run a Scan Program to simulate with variations in weight and height. Please see this short video on how to do t...

10 meses hace | 1

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Is there any way to export a simbiology model diagram in high resolution?
With R2021b, you can export the diagram as a tiff, png, jpeg, etc. by selecting Export->Export Diagram on Model Builder Home tab...

alrededor de 1 año hace | 0

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Why do I receive an 'Invalid input argument of type 'double'. Input must be a structure or a Java or COM object' error while loading data in a simbiology fit program?
Are you running R2021b and is your dataset has only one group? If so, this is likely a known bug with the app that affects datas...

más de 1 año hace | 0

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How can I change the compartment, species and parameter through variants?
Hi, if you choose Initial Coniditions on the home tab of Model Builder, you will see that the values on the Initial Contitions c...

más de 1 año hace | 1

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How can i do "code capture" in Simbiology of MATLAB 2020b version?
Hi, The "code capture" tool is not available in the current version of SimBiolgy. However, you can see the MATLAB code behind ...

más de 1 año hace | 1

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Slider in Simbiology Change Range
Hi Damir, In R2021a you can just type the upper and lower range in the area below the slider and click enter. Please see belo...

casi 2 años hace | 0

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How can I optimize parallel simulations of a SimBiology model?
Hi Colton, Yes, using SimFunction would be better as it offers easy and efficient parallelization and avoids repeated compilati...

más de 2 años hace | 1

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Where is "RUN GROUP SIMULATION" in Simbiology Version 5.10 (R2020a)?
Hi Isabel, group simulation is no longer available starting 19b. Instead, you can create a scan program where you can input Dose...

más de 2 años hace | 0

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Can I generate MATLAB code for a PK simulation built with SimBiology APP?
Hi Wei, If you right-click on the program on Model Analyzer and choose View program code, this will open the code for the pro...

casi 3 años hace | 2

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compartment is not being used in the model
Hi, You can ignore the "compartment is not being used in the model" warning. This warning is a benign bug with this version. S...

casi 3 años hace | 0

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how to incorpolate various variables in simbiology model
Hi Kazutaka, You can export SimBiology model from GUI to MATLAB workspace and then use a script to add parameters. If you keep...

casi 3 años hace | 0

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How to do model fitting in simbiology
Hello, You can "dose" Body Weight to achieve this: Set "body weight" column as a dose column - dose2 if you already have an a...

casi 3 años hace | 1

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Respondida
How to compute NCA in case of drug infusion in Simbiology? There are options for bolus doses but is there a option to compute for drug infusion regimen?
Hi Praveen, NCA functionality in SimBiology currently doesn't support infusion dosing. Fulden

más de 3 años hace | 0

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Is there a good tutorial for incorporating some of the MCMC code into a custom task in Simbiology?
Hi Andrew, You can implement this, or custom analyses in general, in SimBiology either by creating a custom task on SimBiology...

más de 3 años hace | 0

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Noncompartmental Analysis - Using Simbiology Desktop (How to Export the calculated statistics?)
Hi Kevin, if you right click anywhere on the NCA table (the table below the "Table of NCA Parameters" title) you'll be able to c...

alrededor de 4 años hace | 1

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Pull a conditional subset of a matrix
If a is a matrix of characters, you can do: a= ['00110'; '01000'; '01011'; '01101']; i = strfind(a(:,end)', '1'); b = a(...

más de 4 años hace | 0

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search an array and find the row and column number of a certain element
Let's assume you have the following array: myArray = {'an' 'example' 'p'}; You can use _find_ to obtain indices where the...

más de 4 años hace | 0

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