t = processTable(pipeline)
returns a table t that contains information about all processes in a
pipeline, including block-specific run start and end times and run statuses.
t = processTable(___,Expanded=tf)
specifies whether to expand t to contain one row for each independent
run of a block, or to collapse multiple runs of the same block into a single row.
The block returns an incomplete result as the block has not yet run.
results(P,trimsequences)
ans =
Incomplete result (0x0) with the following outputs:
TrimmedFASTQFiles
NumTrimmed
NumUntrimmed
Not Run: 0
Complete: 0
Error: 0
Run the pipeline and check the run status of each block in the process table. The samFile block had no error, but the SeqTrim block generated an error as indicated by the Status column. The SeqTrim block generated an error because it was expecting a FASTQ file as an input but received a SAM file instead.
Pipeline blocks, specified as a bioinfo.pipeline.Block object, vector of block objects, character vector,
string scalar, string vector, or cell array of character vectors representing block
names.
Flag to contain one row per each independent block run or group all runs of the same
block into a single row, specified as a numeric or logical 1 (true)
or 0 (false).
Each row in the table represents a block, and there are corresponding
Status, RunStart, RunEnd, and
RunErrors columns for each block.
By default, the function groups (or collapses) all runs of the same block into a
single row. If a block is run n independent times (per its
SplitDimension property of the input port), then the table
variable value for each column is an n-by-1 cell array. For instance,
the next figure is an example of a (default) collapsed process table (Expanded
= false). Note that for the Bowtie2_1,
SamSort_1 and Cufflinks_1 blocks, the table
variable values are 2-by-1 cell arrays because each of these blocks were run 2 times
independently.
The next figure is the same table with the expanded cell array (Expanded =
true).
You clicked a link that corresponds to this MATLAB command:
Run the command by entering it in the MATLAB Command Window.
Web browsers do not support MATLAB commands.
Seleccione un país/idioma
Seleccione un país/idioma para obtener contenido traducido, si está disponible, y ver eventos y ofertas de productos y servicios locales. Según su ubicación geográfica, recomendamos que seleccione: .
También puede seleccionar uno de estos países/idiomas:
Cómo obtener el mejor rendimiento
Seleccione China (en idioma chino o inglés) para obtener el mejor rendimiento. Los sitios web de otros países no están optimizados para ser accedidos desde su ubicación geográfica.