ttest2

Two-sample t-test

Syntax

h = ttest2(x,y)

h = ttest2(x,y,Name,Value)

[h,p] = ttest2(___)

[h,p,ci,stats] = ttest2(___)

Description

h = ttest2(x,y) returns a test decision for the null hypothesis that the data in vectors x and y comes from independent random samples from normal distributions with equal means and equal but unknown variances, using the two-sample t-test. The alternative hypothesis is that the data in x and y comes from populations with unequal means. The result h is 1 if the test rejects the null hypothesis at the 5% significance level, and 0 otherwise.

h = ttest2(x,y,Name,Value) returns a test decision for the two-sample t-test with additional options specified by one or more name-value pair arguments. For example, you can change the significance level or conduct the test without assuming equal variances.

[h,p] = ttest2(___) also returns the p-value, p, of the test, using any of the input arguments in the previous syntaxes.

[h,p,ci,stats] = ttest2(___) also returns the confidence interval on the difference of the population means, ci, and the structure stats containing information about the test statistic.

Examples

Two-Sample t-Test for Equal Means

Load the data set. Create vectors containing the first and second columns of the data matrix to represent students’ grades on two exams.

load examgrades
x = grades(:,1);
y = grades(:,2);

Test the null hypothesis that the two data samples are from populations with equal means.

[h,p,ci,stats] = ttest2(x,y)

h = 0

p = 0.9867

ci = 2×1

   -1.9438
    1.9771

stats = struct with fields:
    tstat: 0.0167
       df: 238
       sd: 7.7084

The returned value of h = 0 indicates that ttest2 does not reject the null hypothesis at the default 5% significance level.

t-Test for Equal Means Without Assuming Equal Variances

Load the data set. Create vectors containing the first and second columns of the data matrix to represent students’ grades on two exams.

load examgrades
x = grades(:,1);
y = grades(:,2);

Test the null hypothesis that the two data vectors are from populations with equal means, without assuming that the populations also have equal variances.

[h,p] = ttest2(x,y,'Vartype','unequal')

h = 0

p = 0.9867

The returned value of h = 0 indicates that ttest2 does not reject the null hypothesis at the default 5% significance level even if equal variances are not assumed.

Input Arguments

x — Sample data

vector | matrix | multidimensional array

Sample data, specified as a vector, matrix, or multidimensional array. ttest2 treats NaN values as missing data and ignores them.

• If x and y are specified as vectors, they do not need to be the same length.

• If x and y are specified as matrices, they must have the same number of columns. ttest2 performs a separate t-test along each column and returns a vector of results.

• If x and y are specified as multidimensional arrays, they must have the same size along all but the first nonsingleton dimension.

Data Types: single | double

y — Sample data

vector | matrix | multidimensional array

Sample data, specified as a vector, matrix, or multidimensional array. ttest2 treats NaN values as missing data and ignores them.

• If x and y are specified as vectors, they do not need to be the same length.

• If x and y are specified as matrices, they must have the same number of columns. ttest2 performs a separate t-test along each column and returns a vector of results.

• If x and y are specified as multidimensional arrays, they must have the same size along all but the first nonsingleton dimension. ttest2 works along the first nonsingleton dimension.

Data Types: single | double

Name-Value Arguments

Specify optional comma-separated pairs of Name,Value arguments. Name is the argument name and Value is the corresponding value. Name must appear inside quotes. You can specify several name and value pair arguments in any order as Name1,Value1,...,NameN,ValueN.

Example: 'Tail','right','Alpha',0.01,'Vartype','unequal' specifies a right-tailed test at the 1% significance level, and does not assume that x and y have equal population variances.

Alpha — Significance level

0.05 (default) | scalar value in the range (0,1)

Significance level of the hypothesis test, specified as the comma-separated pair consisting of 'Alpha' and a scalar value in the range (0,1).

Example: 'Alpha',0.01

Data Types: single | double

Dim — Dimension

first nonsingleton dimension (default) | positive integer value

Dimension of the input matrix along which to test the means, specified as the comma-separated pair consisting of 'Dim' and a positive integer value. For example, specifying 'Dim',1 tests the column means, while 'Dim',2 tests the row means.

Example: 'Dim',2

Data Types: single | double

Tail — Type of alternative hypothesis

'both' (default) | 'right' | 'left'

Type of alternative hypothesis to evaluate, specified as the comma-separated pair consisting of 'Tail' and one of:

• 'both' — Test against the alternative hypothesis that the population means are not equal.

• 'right' — Test against the alternative hypothesis that the population mean of x is greater than the population mean of y.

• 'left' — Test against the alternative hypothesis that the population mean of x is less than the population mean of y.

ttest2 tests the null hypothesis that the population means are equal against the specified alternative hypothesis.

Example: 'Tail','right'

Vartype — Variance type

'equal' (default) | 'unequal'

Variance type, specified as the comma-separated pair consisting of 'Vartype' and one of the following.

'equal'	Conduct test using the assumption that x and y are from normal distributions with unknown but equal variances.
'unequal'	Conduct test using the assumption that x and y are from normal distributions with unknown and unequal variances. This is called the Behrens-Fisher problem. ttest2 uses Satterthwaite’s approximation for the effective degrees of freedom.

Vartype must be a single variance type, even when x is a matrix or a multidimensional array.

Example: 'Vartype','unequal'

Output Arguments

h — Hypothesis test result

1 | 0

Hypothesis test result, returned as 1 or 0.

• If h = 1, this indicates the rejection of the null hypothesis at the Alpha significance level.

• If h = 0, this indicates a failure to reject the null hypothesis at the Alpha significance level.

p — p-value

scalar value in the range [0,1]

p-value of the test, returned as a scalar value in the range [0,1]. p is the probability of observing a test statistic as extreme as, or more extreme than, the observed value under the null hypothesis. Small values of p cast doubt on the validity of the null hypothesis.

ci — Confidence interval

vector

Confidence interval for the difference in population means of x and y, returned as a two-element vector containing the lower and upper boundaries of the 100 × (1 – Alpha)% confidence interval.

stats — Test statistics

structure

Test statistics for the two-sample t-test, returned as a structure containing the following:

• tstat — Value of the test statistic.

• df — Degrees of freedom of the test.

• sd — Pooled estimate of the population standard deviation (for the equal variance case) or a vector containing the unpooled estimates of the population standard deviations (for the unequal variance case).

More About

Two-Sample t-test

The two-sample t-test is a parametric test that compares the location parameter of two independent data samples.

The test statistic is

$$t=\frac{\overline{x}-\overline{y}}{\sqrt{\frac{s_x^2}{n}+\frac{s_y^2}{m}}},$$

where $$\overline{x}$$ and $$\overline{y}$$ are the sample means, s_x and s_y are the sample standard deviations, and n and m are the sample sizes.

In the case where it is assumed that the two data samples are from populations with equal variances, the test statistic under the null hypothesis has Student's t distribution with n + m – 2 degrees of freedom, and the sample standard deviations are replaced by the pooled standard deviation

$$s=\sqrt{\frac{\left(n-1\right)s_x^2+\left(m-1\right)s_y^2}{n+m-2}.}$$

In the case where it is not assumed that the two data samples are from populations with equal variances, the test statistic under the null hypothesis has an approximate Student's t distribution with a number of degrees of freedom given by Satterthwaite's approximation. This test is sometimes called Welch’s t-test.

Multidimensional Array

A multidimensional array has more than two dimensions. For example, if x is a 1-by-3-by-4 array, then x is a three-dimensional array.

First Nonsingleton Dimension

The first nonsingleton dimension is the first dimension of an array whose size is not equal to 1. For example, if x is a 1-by-2-by-3-by-4 array, then the second dimension is the first nonsingleton dimension of x.

Tips

• Use sampsizepwr to calculate:

  • The sample size that corresponds to specified power and parameter values;

  • The power achieved for a particular sample size, given the true parameter value;

  • The parameter value detectable with the specified sample size and power.

Extended Capabilities

GPU Arrays

Accelerate code by running on a graphics processing unit (GPU) using Parallel Computing Toolbox™.

This function fully supports GPU arrays. For more information, see Run MATLAB Functions on a GPU (Parallel Computing Toolbox).